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2025 Vol.43, Issue 1 Preview Page

Research Article

28 February 2025. pp. 1-20
Abstract
References
1

Ángela SP, Olaf W, Pedro JM, Federico D, Rosa MR, Pedro M (2018) DNA methylation analysis of dormancy release in almond (Prunus dulcis) flower buds using epi-genotyping by sequencing. Int J Mol Sci 19:3542. https://doi.org/10.3390/ijms19113542

10.3390/ijms1911354230423798PMC6274898
2

Badii G, Mohamed G, Mehdi BM (2017) Effect of hydrogen cyanamide on vegetative growth, yield, and fruit quality of fig cv. Zidi in a warm production area. Int J Fruit Sci 17:63-71. https://doi.org/10.1080/15538362.2016.1202169

10.1080/15538362.2016.1202169
3

Basdeki L, Hagidimitriou M (2019) The role of DNA methylation in perennial plants. Not Sci Biol 11:1. https://doi.org/10.15835/nsb11110446

10.15835/nsb11110446
4

Beauvieux R, Wenden B, Dirlewanger E (2018) Bud dormancy in perennial fruit tree species: A pivotal role for oxidative cues. Front Plant Sci 9:657. https://doi.org/10.3389/fpls.2018.00657

10.3389/fpls.2018.0065729868101PMC5969045
5

Bilichak A, Ilnystkyy Y, Hollunder Y, Kovalchuk I (2012) The progeny of Arabidopsis thaliana plants exposed to salt exhibit changes in DNA methylation, histone modifi cations and gene expression, PLoS ONE 7:e30515. https://doi.org/10.1371/journal.pone.0030515

10.1371/journal.pone.003051522291972PMC3264603
6

Bitonti MB, Cozza R, Chiappetta A, Giannino D, Castiglione MR, Innocenti AM (2002) Distinct nuclear organization, DNA methylation pattern and cytokinin distribution mark juvenile, juvenile like and adult vegetative apical meristems in peach (Prunus persica (L.) Batsch). J Exp Bot 53:1047-1054. https://doi.org/10.1093/jexbot/53.371.1047

10.1093/jexbot/53.371.104711971916
7

Bond DM, Finnegan EJ (2007) Passing the message on: inheritance of epigenetic traits. Trends Plant Sci 12:211-216. https://doi.org/10.1016/j.tplants.2007.03.010

10.1016/j.tplants.2007.03.01017434332
8

Bound SA, Jones KM (2004) Hydrogen cyanamide impacts on flowering, crop load, and fruit quality of red 'Fuji' apple (Malus domestica). N Z J Crop Hortic Sci 32:227-234. https://doi.org/10.1080/01140671.2004.9514300

10.1080/01140671.2004.9514300
9

Bouyer D, Kramdi A, Kassam M, Heese M, Schnittger A, Roudier F (2017) DNA Methylation dynamics during early plant life. Genome Biol 18:179. https://doi.org/10.1186/s13059-017-1313-0

10.1186/s13059-017-1313-028942733PMC5611644
10

Chen B, Xu HM, Guo YY, Paul Grünhofer, Lukas Schreiber, Lin JX, Li RL (2021) Transcriptomic and epigenomic remodeling occurs during vascular cambium periodicity in Populus tomentosa. Hortic Res 8:102. https://doi.org/10.1038/S41438-021-00535-w

10.1038/s41438-021-00535-w33931595PMC8087784
11

Chen XH, Xu XP, Shen X, Li HS, Zhu C, Chen RZ, Munir N, Zhang ZH, Chen YK, et al. (2020) Genome-wide investigation of DNA methylation dynamics reveals a critical role of dna demethylation during the early somatic embryogenesis of dimocarpus longan lour. Tree Physiol 40:1807-1826. https://doi.org/10.1093/treephys/tpaa097

10.1093/treephys/tpaa09732722792
12

Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, et al. (2008) Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452:215-219. https://doi.org/10.1038/nature06745

10.1038/nature0674518278030PMC2377394
13

Couturier J, De Faÿ E, Fitz M, Wipf D, Blaudez D, Chalot M (2010) A high affinity amino acid transporter specifi cally expressed in differentiating xylem cells of poplar. J Exp Bot 6:1671-1682. https://doi.org/10.1093/jxb/erq036

10.1093/jxb/erq03620190041
14

Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, Geest H, Bianco L, Micheletti D, et al. (2017) High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development. Nat Genet 49:1099-1106. https://doi.org/10.1038/ng.3886

10.1038/ng.388628581499
15

de Almeida LVB, Figueiredo FAMMA, de Deus BC, Viana LH, Ferraz TM, Martins AO, Smith REB, Campostrini E (2017) Plastic covering film can reduce midday depression photosynthesis of field-grown tropical grapevine in high photosynthetic photon flux. Acta Hortic 24:1765-1778. https://doi.org/10.17660/actahortic.2017.1157.36

10.17660/ActaHortic.2017.1157.36
16

Ding Y, Shi Y, Yang S (2019) Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants. New Phytol 222:1690-1704. https://doi.org/10.1111/nph.15696

10.1111/nph.1569630664232
17

Douet J, Blanchard B, Cuvillier C, Tourmente S (2008) Interplay of RNA Pol IV and ROS1 during post-embryonic 5S rdna chromatin remodeling. Plant Cell Physiol 49:1783-1791. https://doi.org/10.1093/pcp/pcn152

10.1093/pcp/pcn15218845569
18

El-Yazal MAS, Rady MM, Sief SA (2012) Foliar-applied dormancy-breaking chemicals change the content of nitrogenous compounds in the buds of apple (Malus sylvestris Mill. cv.Anna) trees. J Hortic Sci Biotech 87:299-304. https://doi.org/10.1080/14620316.2012.11512868

10.1080/14620316.2012.11512868
19

Grover JW, Burgess DG, Kendall T, Baten A, Mosher RA (2020) Abundant expression of maternal sirnas is a conserved feature of seed development. Proc Natl Acad Sci USA 117:15305-15315. https://doi.org/10.1073/pnas.2001332117

10.1073/pnas.200133211732541052PMC7334491
20

Guo DL, Li Q, Zhao HL, Wang ZG, Yu YH (2019) The variation of berry development and DNA methylation after treatment with 5-azacon 'Kyoho' grape. Sci Hortic 246:265-271. https://doi.org/10.1016/j.scienta.2018.11.006

10.1016/j.scienta.2018.11.006
21

Guo H, Fan Y, Guo H, Wu J, Zeng F (2020) Somatic embryogenesis critical initiation stage-specific mchh hypomethylation reveals epigenetic basis underlying embryogenic redifferentiation in cotton. Plant Biotechnol J 18:1648-1650. https://doi.org/10.1111/pbi.12988

10.1111/pbi.1298829999579PMC6335067
22

Harris CJ, Scheibe M, Wongpalee SP, Liu W, Cornett EM, Vaughan RM, Li X, Chen W, Xue Y, et al. (2018) A DNA methylation reader complex that enhances gene transcription. Science 362:1182-1186. https://doi.org/10.1126/science.aar7854

10.1126/science.aar785430523112PMC6353633
23

Hasbun R, Valledor L, Berdasco M, Santamaria E, Canal MJ, Rodriguez R (2005) In vitro proliferation and genome DNA methylation in adult chestnuts. Acta Hortic 693:333. https://doi.org/10.17660/ActaHortic.2005.693.42

10.17660/ActaHortic.2005.693.42
24

Hauser MT, Aufsatz W, Jonak C, Lusching C (2011) Transgenerational epigenetic inheritance in plants. Biochim Biophys Acta Mol Cell Res 8:459-468. https://doi.org/10.1016/j.bbagrm.2011.03.007

10.1016/j.bbagrm.2011.03.00721515434PMC4359895
25

Ionescu IA, López-Ortega G, Burow M, Bayo-Canha A, Junge A, Gericke O, Møller BL, Sánchez-Pérez R (2017) Transcriptome and metabolite changes during hydrogencyanamide-induced floral bud break in sweet cherry. Front Plant Sci 8:1233. https://doi.org/10.3389/fpls.2017.01233

10.3389/fpls.2017.0123328769948PMC5511853
26

Ji L, Mathioni SM, Johnson S, Tucker D, Bewick AJ, Kim KD, Daron J, Slotkin RK, Jackson SA, et al. (2019) Genome-wide reinforcement of DNA methylation occurs during somatic embryogenesis in soybean. Plant Cell 31:2315-2331. https://doi.org/10.1105/tpc.19.00255

10.1105/tpc.19.0025531439802PMC6790092
27

Jones L, Ratcliff F, Baulcombe DC (2001) RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance. Curr Biol 11:747-757. https://doi.org/10.1016/S0960-9822(01)00226-3

10.1016/S0960-9822(01)00226-311378384
28

Kumar G, Rattan UK, Singh AK (2016) Chilling-mediated DNA methylation changes during dormancy and its release reveal the importance of epigenetic regulation during winter dormancy in Apple (Malus × domestica Borkh.). PLoS ONE 11:e0149934. https://doi.org/10.1371/journal.pone.0149934

10.1371/journal.pone.014993426901339PMC4763039
29

Lang Z, Wang Y, Tang K, Zhu JK (2017) Critical roles of DNA demethylation in the activation of ripening-induced genes and inhibition of ripening-repressed genes in tomato fruit. PNAS 114, E4511-E4519. https://doi.org/10.1073/pnas.1705233114

10.1073/pnas.170523311428507144PMC5465898
30

Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11:204-220. https://doi.org/10.1038/nrg2719

10.1038/nrg271920142834PMC3034103
31

Li J, Wang M, Li Y, Zhang Q, Keith L, Henry D, Jin S, Zhang X (2019) Multi-omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation process. Plant Biotechnol J 17:435-450. https://doi.org/10.1111/pbi.12988

10.1111/pbi.1298829999579PMC6335067
32

Li XF , Zhang ZL (2016) Experimental physiology in physiology physiology (5th edition). Beijing: Higher Education Press

33

Lin JY, Le BH, Chen M, Henry KF, Henry KF, Goldberg RB (2017) Similarity between soybean and arabidopsis seed methylomes and loss of non-CG methylation does not affect seed development. Proc Nat Acad Sci USA 114:9730-9739. https://doi.org/10.1073/pnas.1716758114

10.1073/pnas.171675811429078418PMC5692608
34

Lin SY, Agehara S (2021) Budbreak patterns and phytohormone dynamics reveal different modes of action between hydrogen cyanamide- and defoliant-induced flower budbreak in blueberry under inadequate chilling conditions. PLoS ONE 16:e0256942. https://doi.org/10.1371/journal.pone.0256942

10.1371/journal.pone.025694234464415PMC8407589
35

Lindroth AM, Cao X, Jackson JP, Zilberman D, Mccallum CM, Henikoff S, Jacobsen SE (2001) Requirement of Chromomethylase3 for maintenance of cpxpg methylation. Science 292:2077-2080. https://doi.org/10.1126/science.1059745

10.1126/science.105974511349138
36

Luedeling E, Girvetz EH, Semeno MA, Brown PH (2011) Climate change affects winter chill for temperate fruit and nut trees. PLoS ONE 6:20155. https://doi.org/10.1371/journal.pone.0020155

10.1371/journal.pone.002015521629649PMC3101230
37

Ma C, Jing C, Chang B, Yan J, Liang B, Liu L, Yang Y, Zhao Z (2018) The effect of promoter methylation on MdMYB1 expression determines the level of anthocyan in accumulation in skin softwonon-redapple cultivars. BMC Plant Biol 18:108. https://doi.org/10.1186/s12870-018-1320-7

10.1186/s12870-018-1320-729871614PMC5989451
38

Mohamed HB, Vadel AM, Geuns JM, Khemira H (2012) Carbohydrate changes during dormancy release in Superior Seedless grapevine cuttings following hydrogen cyanamide treatment. Sci Hortic 140:19-25. https://doi.org/10.1016/j.scienta.2012.03.019

10.1016/j.scienta.2012.03.019
39

Moisa SS, Tsetlin VV, Levinskich MA, Nefedova EL (2016) Low doses of ionized radiation and hypomagnetic field alter redox properties of water and physiological characteristics of seeds of the highest plants. J Biomed Sci Eng 9:410-418. http://dx.doi.org/10.4236/jbise.2016.98036

10.4236/jbise.2016.98036
40

Narsai R, Secco D, Schultz MD, Ecker JR, Lister R, Whelan J (2017) Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re oxygenation. Plant J 89:805-824. https://doi.org/10.1111/tpj.13418

10.1111/tpj.1341827859855
41

Ophir R, Pang X, Halaly T, Venkateswari J, Lavee S, Galbraith D, Or E (2009) Gene-expression profi ling of grape bud response to two alternative dormancy-release stimuli expose possible links between impaired mitochondrial activity, hypoxia, ethylene-ABA interplay and cell enlargement. Plant Mol Biol 71:403. https://doi.org/10.1007/s11103-009-9531-9

10.1007/s11103-009-9531-919653104
42

Pe'rez FJ, Vergara R, Rubio S (2008) H2O2 is involved in the dormancy-breaking effect of hydrogen cyanamide in grapevine buds. Plant Growth Regul 55:149-155. https://doi.org/10.1007/s10725-008-9269-4

10.1007/s10725-008-9269-4
43

Petri JL, Leite GB, Couto M (2014) Chemical induction of budbreak: New generation products to replace hydrogen cyanamide. Acta Hortic 10:157-166. https://doi.org/10.17660/ActaHortic.2014.1042.19

10.17660/ActaHortic.2014.1042.19
44

Prudencio ÁS, Werner O, Martínez-García PJ, Dicenta F, Ros RM, Martínez-Gómez P (2018) DNA Methylation Analysis of Dormancy Release in Almond (Prunus dulcis) Flower Buds Using Epi-Genotyping by Sequencing. In J Mol Sci 19:11. https://doi.org/10.3390/ijms19113542

10.3390/ijms1911354230423798PMC6274898
45

Rademacher W (2015) Plant growth regulators: backgrounds and uses in plant production. J Plant Growth Regul 34:845-872. https://doi.org/10.1007/s00344-015-9541-6

10.1007/s00344-015-9541-6
46

Rajkumar MS, Gupta K, Khemka NK, Garg R, Jain M (2020) Dna methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea. Commun Biol 3:340. https://doi.org/10.1038/s42003-020-1059-1

10.1038/s42003-020-1059-132620865PMC7335156
47

Rodrigues JA, Zilberman D (2015) Evolution and function of genomic imprinting in plants. Genes Dev 29:2517-2531. https://doi.org/10.1101/gad.269902.115

10.1101/gad.269902.11526680300PMC4699382
48

Roitsch T, González MC (2004) Function and regulation of plant invertases: sweet sensations. Trends Plant Sci 9:606-613. https://doi.org/10.1016/j.tplants.2004.10.009

10.1016/j.tplants.2004.10.00915564128
49

Rothkegel K, Sandoval P, Soto E, Ulloa L, Riveros A, Lillo-Carmona V, Cáceres-Molina J, Almeida AM, Meneses C (2020) Dormant but active: chilling accumulation modulates the epigenome and transcriptome of prunus avium during bud dormancy. Front Plant Sci 11:1115. https://doi.org/10.3389/fpls.2020.01115

10.3389/fpls.2020.0111532765576PMC7380246
50

Santamaria ME, Rodriguez R, Canal MJ, Toorop PE (2011) Transcriptome analysis of chestnut (Castanea sativa) tree buds suggests a putative role for epigenetic control of bud dormancy. Ann Bot 108:485-498. https://doi.org/10.1093/aob/mcr185

10.1093/aob/mcr18521803738PMC3158698
51

Segantini DM, Leonel S, da Silva Ripardo AK, Tecchio MA, de Souza ME (2015) Breaking dormancy of "Tupy" blackberry in subtropical conditions. Am J Plant Sci 6:1760-1767. http://dx.doi.org/10.4236/ajps.2015.611176

10.4236/ajps.2015.611176
52

Sheard AG, Johnson SD, Cook NC (2009) Effect of timing and concentration of rest breaking agents on budburst in 'Bing' sweet cherry under conditions of inadequate winter chilling in South Africa. S Afr J Plant Soil 26:73-79. https://doi.org/10.1080/02571862.2009.10639937

10.1080/02571862.2009.10639937
53

Shim D, Ko JH, Kim WC, Wang Q, Keathley DE, Han KH (2014) A molecular framework for seasonal growth dormancy regulation in perennial plants. Hortic Res 1:14059. https://doi.org/10.1038/hortres.2014.59

10.1038/hortres.2014.5926504555PMC4591672
54

Sokolova DA, Vengzhen GS, Kravets AP (2014). Effect of epigenetic polymorphism of corn seeds on their germination rate and resistance of seedlings under uv-c exposure. Cytol 48:227-232. https://doi.org/10.3103/S0095452714040082

10.3103/S0095452714040082
55

Sudawan B, Chang CS, Chao H, Ku MSB, Yen Y (2016) Hydrogen cyanamide breaks grapevine bud dormancy in the summer through transient activation of gene expression and accumulation of reactive oxygen and nitrogen species. BMC Plant Biol 16:202. https://doi.org/10.1186/s12870-016-0889-y

10.1186/s12870-016-0889-y27627883PMC5024461
56

Tang MJ, Xu L, Wang Y, Dong JH, Zhang XL, Wang K (2021) Melatonin-induced DNA demethylation of metal transporters and antioxidant genes alleviates lead stress in radish plants. Hortic Res 8:124. https://doi.org/10.1038/s41438-021-00561-8

10.1038/s41438-021-00561-834059663PMC8167184
57

Walton EF, Clark CJ, Boldingh HL (1991) Effect of hydrogen cyanamide on amino acid profiles in kiwifruit buds during budbreak. Plant Physiol 97:1256-1259. https://doi.org/10.1104/pp.97.3.1256

10.1104/pp.97.3.125616668518PMC1081151
58

Wang H, Xia X, An L (2021) Effect of hydrogen cyanamide on bud break, fruit yield and quality of highbush blueberry in greenhouse production. Agriculture 11:439. https://doi.org/10.3390/agriculture11050439

10.3390/agriculture11050439
59

Wang L, Shi Y, Chang XJ, Jing SL, Zhang QJ, You CJ, Yuan HY, Wang HF (2018) DNA methylome analysis provides evidence that the expansion of the tea genome is linked to TE bursts. Plant Biotechnol J 17:826-835. https://doi.org/10.1111/pbi.13018

10.1111/pbi.1301830256509PMC6419580
60

Xu J, Zhou S, Gong X, Song Y, Guan Q (2018) Single‐base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple. Plant Biotechnol J 16:672-687. https://doi.org/10.1111/pbi.12820

10.1111/pbi.1282028796917PMC5787839
61

Zhang B, Tieman DM, Jiao C, Xu Y, Klee HJ (2016) Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation. Proc Natl Acad Sci USA 113:12580-12585. https://doi.org/10.1073/pnas.1613910113

10.1073/pnas.161391011327791156PMC5098663
Information
  • Publisher :KOREAN SOCIETY FOR HORTICULTURAL SCIENCE
  • Publisher(Ko) :한국원예학회
  • Journal Title :Horticultural Science and Technology
  • Journal Title(Ko) :원예과학기술지
  • Volume : 43
  • No :1
  • Pages :1-20
  • Received Date : 2024-05-07
  • Accepted Date : 2024-05-07