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2017 Vol.35, Issue 2
Genomic Tools and Their Implications for Vegetable Breeding
Ngan Thi Phan1
,
Sung-Chur Sim12*
1Department of Bioresources Engineering, Sejong University
2Plant Engineering Research Institute, Sejong University
*교신저자. *Corresponding Author. 
30 April 2017. pp. 149-164
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Abstract

Next generation sequencing (NGS) technologies have led to the rapid accumulation of genome sequences through whole-genome sequencing and re-sequencing of crop species. Genomic resources provide the opportunity for a new revolution in plant breeding by facilitating the dissection of complex traits. Among vegetable crops, reference genomes have been sequenced and assembled for several species in the Solanaceae and Cucurbitaceae families, including tomato, pepper, cucumber, watermelon, and melon. These reference genomes have been leveraged for re-sequencing of diverse germplasm collections to explore genome-wide sequence variations, especially single nucleotide polymorphisms (SNPs). The use of genomewide SNPs and high-throughput genotyping methods has led to the development of new strategies for dissecting complex quantitative traits, such as genome-wide association study (GWAS). In addition, the use of multi-parent populations, including nested association mapping (NAM) and multiparent advanced generation intercross (MAGIC) populations, has helped increase the accuracy of quantitative trait loci (QTL) detection. Consequently, a number of QTL have been discovered for agronomically important traits, such as disease resistance and fruit traits, with high mapping resolution. The molecular markers for these QTL represent a useful resource for enhancing selection efficiency via marker-assisted selection (MAS) in vegetable breeding programs. In this review, we discuss current genomic resources and markertrait association analysis to facilitate genome-assisted breeding in vegetable species in the Solanaceae and Cucurbitaceae families.

Keywords
NGS
molecular marker
linkage analysis
genome-wide association study
marker-assisted selection

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Information
  • Publisher :KOREAN SOCIETY FOR HORTICULTURAL SCIENCE
  • Publisher(Ko) :한국원예학회
  • Journal Title :Horticultural Science and Technology
  • Journal Title(Ko) :원예과학기술지
  • Volume : 35
  • No :2
  • Pages :149-164
  • Received Date : 2016-09-26
  • Revised Date : 2016-10-20
  • Accepted Date : 2016-10-09
  • DOI :https://doi.org/10.12972/kjhst.20170018
Journal Informaiton Horticultural Science and Technology Horticultural Science and Technology
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